Western Cape COVID-19 levels higher than rest of SA. Is it because they defy lockdown there? Probably not, says phone data

https://www.ecologi.st/post/covid/ Evidence from phone data that W Cape adherence to lockdown has been quite strict thus lack of adherence is less likely to be the cause of the spike there. Thanks to Monomiat Ebrahim for the share.

Wondering if this means it is more likely to be:

1. A demographic feature such as age

2. A latitude feature – around the equator, COVID-19 has generally been less prevalent

3. A climate feature

4. High concentrations of “starters” leading to a critical mass for an epidemic

…add your pet hypothesis here!

From Judea Pearl’s blog: report of a webinar: “Artificial Intelligence and COVID-19: A wake-up call” #epitwitter @TheBJPS

Check the entry on Pearl’s blog which includes a write-up provided by the organisers

Video of the event is available too

This Thursday at 11:30am (via Zoom) the @CHESS_DurhamUni reading group will be discussing our recent report from the IFK, ‘A Framework for Decisions in a Post-COVID World’ by @AlexBroadbent

This Thursday at 11:30am (via Zoom) the @CHESS_DurhamUni reading group will be discussing ‘A Framework for Decisions in a Post-COVID World‘ by @AlexBroadbent . . . please contact admin.chess@durham.ac.uk for the paper and joining instructions #COVID19 #socialpolicy #policymakers

“…regardless of government interventions [, after] around a two week exponential growth of cases (and, subsequently, deaths) some kind of break kicks in, and growth starts slowing down. The curve quickly becomes “sub-exponential”.

https://unherd.com/thepost/nobel-prize-winning-scientist-the-covid-19-epidemic-was-never-exponential/

Freddie Sayers of Unherd interviews Michael Levitt (a Nobel-prize-winning non-epidemiologist) on a purely statistical observations of the pattern of the epidemic. Given that the only way we have of measuring effectiveness of government interventions is statistical, that’s interesting. The fun stuff (epidemiological and statistical) comes in deciding whether the correlation is causal. But there’s been no progress with that, in my opinion; in fact for me it is here that the epidemiological profession has disappointed me – it is at if epidemiology has forgotten everything it ever taught itself about causal inference. Against that background, this is ought to give pause for thought.

Potential Outcomes Approach as “epidemiometrics”

In a review of Jan Tinbergen’s work, Maynard Keynes wrote:

At any rate, Prof. Tinbergen agrees that the main purpose of his method is to discover, in cases where the economist has correctly analysed beforehand the qualitative character of the causal relations, with what strength each of them operates… [1]

Nancy Cartwright cites this passage in the context of describing the business of econometrics, in the introduction to her Hunting Causes and Using Them [2]. Her idea is that econometrics assumes that economics can be an exact science, that economic phenomena are governed by causal laws, and sets out to quantify them, making econometrics a fruitful domain for a study of the connection between laws and causes.

This helped me with an idea that first occurred to me at the 9th Nordic Conference of Epidemiology and Register-Based Health Research, that the potential outcomes approach to causal inference in epidemiology might be understood as the foundational work of a sub-discipline within epidemiology, related to epidemiology as econometrics is to economics. We might call it epidemiometrics.

This suggestion appears to resonate with Tyler Vanderweele’s contention that:

A distinction should be drawn between under what circumstances it is reasonable to refer to something as a cause and under what circumstances it is reasonable to speak of an estimate of a causal effect… The potential outcomes framework provides a way to quantify causal effects… [3]

The distinction between causal identification and estimation of causal effects does not resolve the various debates around the POA in epidemiology, since the charge against the POA is that as an approach (the A part in POA) it is guilty of overreach. For example, the term “causal inference” is used prominently where “quantitative causal estimation” might be more accurate [4]. 

Maybe there is a lesson here from the history of economics. While the discipline of epidemiology does not pretend to uncover causal laws, as does economics, it nevertheless does seek to uncover causal relationships, at least sometime. The Bradford Hill viewpoints are for answering a yes/no question: “is there any other way of explaining the facts before us, is there any other answer equally, or more, likely than cause and effect?” [5]. Econometrics answers a quantitative question: what is the magnitude of the causal effect, assuming that there is one? This question deserves its own disciplines because, like any quantitative question, it admits of many more precise and non-equivalent formulations, and of the development of mathematical tools. Recognising the POA not as an approach to epidemiology research, but as a discipline within epidemiology is deserved.

Many involved in discussions of the POA (including myself and co-authors) have made the point that the POA is part of a larger toolkit and that this is not always recognised [6,7], while others have argued that causal identification is a separate goal of epidemiology from causal estimation and that is at risk of neglect [8]. The italicised components of these contentions do not in fact concern the business of discovering or estimating causality. They are points about the way epidemiology is taught, and how it is understood by those who practice it. They are points, not about causality, but about epidemiology itself.

A disciplinary distinction between epidemiology and a sub-discipline of epidemiometrics might assist in realising this distinction that many are sensitive to, but that does not seem to have poured oil on the water of discussions of causality. By “realising”, I mean enabling institutional recognition at departmental or research unit level, enabling people to list their research interests on CVs and websites, assisting students in understanding the significance of the methods they are learning, and, most important of all, softening the dynamics between those who “advocate” and those who “oppose” the POA. To advocate econometrics over economics, or vice versa, would be nonsensical, like arguing liner algebra is more or less important than mathematics. Likewise, to advocate or oppose epidemiometrics would be recognisably wrong-headed. There would remain questions about emphasis, completeness, relative distribution of time and resources–but not about which is the right way to achieve the larger goals.

Few people admit to “advocating” or “opposing” the methods themselves, because in any detailed discussion it immediately becomes clear that the methods are neither universally, nor never, applicable. A disciplinary distinction–or, more exactly, a distinction of a sub-discipline of study that contributes in a special way to the larger goals of epidemiology–might go a long way to alleviating the tensions that sometimes flare up, occasionally in ways that are unpleasant and to the detriment of the scientific and public health goals of epidemiology as a whole.

[1] J.M. Keynes, ‘Professor Tinbergen’s Method’, Economic Journal, 49 (1939), 558-68 n. 195.

[2] N. Cartwright, Hunting Causes and Using Them (New York: Cambridge University Press, 2007), 15.

[3] T. Vanderweele, ‘On causes, causal inference, and potential outcomes’, International Journal of Epidemiology, 45 (2016), 1809.

[4] M.A. Hernán and J.M. Robins, Causal Inference: What If (Boca Raton: Chapman & Hall/CRC, 2020).

[5] A. Bradford Hill, ‘The Environment and Disease: Association or Causation?’, Proceedings of the Royal Society of Medicine, 58 (1965), 299.

[6] J. Vandenbroucke, A. Broadbent, and N. Pearce, ‘Causality and causal inference in epidemiology: the need for a pluralistic approach’, International Journal of Epidemiology, 45 (2016), 1776-86.

[7] A. Broadbent, J. Vandenbroucke, and N. Pearce, ‘Response: Formalism or pluralism? A reply to commentaries on ‘Causality and causal inference in epidemiology”, International Journal of Epidemiology, 45 (2016), 1841-51.

[8] Schwartz et al., ‘Causal identification: a charge of epidemiology in danger of marginalization’, Annals of Epidemiology, 26 (2016), 669-673.

Causal Inference: IJE Special Issue

Papers from the December 2016 special issue of IJE are now all available online. Several are open access, and I attach these.

Philosophers who want to engage with real life science, on topics relating to causation, epidemiology, and medicine, will find these papers a great resource. So will epidemiologists and other scientists who want or need to reflect on causal inference. Most of the papers are not written by philosophers, and most do not start from standard philosophical starting points. Yet the topics are clearly philosophical. This collection would also form a great starting point for a doctoral research projects in various science-studies disciplines.

Papers 1 and 2 were first available in January. Two letters were written in response (being made available online around April) along with a response and I have included these in the list for completeness. The remaining papers were written during the course of 2016 and are now available. Many of the authors met at a Radcliffe Workshop in Harvard in December 2016. An account of that workshop may be forthcoming at some stage, but equally it may not, since not all of the participants felt that it was necessary to prolong the discussion or to share the outcomes of the workshop more widely. At some point I might simply write up my own account, by way of part-philosophical, part-sociological story.

  1. Causality and causal inference in epidemiology: the need for  a pluralistic approach‘ Jan P Vandenbroucke, Alex Broadbent and Neil Pearce. doi: 10.1093/ije/dyv341
  2. ‘The tale wagged by the DAG: broadening the scope of causal inference and explanation for epidemiology.’ Nancy Krieger and George Davey-Smith. doi: 10.1093/ije/dyw114
    1. Letter: Tyler J. VanderWeele, Miguel A. Hernán, Eric J. Tchetgen Tchetgen, and James M. Robins. Letter to the Editor. Re: Causality and causal inference in epidemiology: the need for a pluralistic approach.
    2. Letter: Arnaud Chiolero. Letter to the Editor. Counterfactual and interventionist approach to cure risk factor epidemiology.
    3. Letter: Broadbent, A., Pearce, N., and Vandenbroucke, J. Authors’ Reply to: VanderWeele et al., Chiolero, and Schooling et al.
  3. ‘Causal inference in epidemiology: potential outcomes, pluralism and peer review.’ Douglas L Weed. doi: 10.1093/ije/dyw229
  4. ‘On Causes, Causal Inference, and Potential Outcomes.’ Tyler VanderWeele. doi: 10.1093/ije/dyw230
  5. ‘Counterfactual causation and streetlamps: what is to be done?’ James M Robins and Michael B Weissman. doi: 10.1093/ije/dyw231
  6. ‘DAGs and the restricted potential outcomes approach are tools, not theories of causation.’ Tony Blakely, John Lynch and Rebecca Bentley. doi: 10.1093/ije/dyw228
  7. ‘The formal approach to quantitative causal inference in epidemiology: misguided or misrepresented?’ Rhian M Daniel, Bianca L De Stavola and Stijn Vansteelandt. doi: 10.1093/ije/dyw227
  8. Formalism or pluralism? A reply to commentaries on ‘Causality and causal inference in epidemiology.’ Alex Broadbent, Jan P Vandenbroucke and Neil Pearce. doi: 10.1093/ije/dyw298
  9. ‘FACEing reality: productive tensions between our epidemiological questions, methods and mission.’ Nancy Krieger and George Davey-Smith. doi: 10.1093/ije/dyw330

Epidemiology and Law: two publications

Recently published:

Forensic Epidemiology, Principles and Practice. 2016. Freeman M and Zeegers M (eds). Eslevier. http://store.elsevier.com/Forensic-Epidemiology/isbn-9780124046443/

(I have a paper on causation and epidemiology.)

Also, previously online but now in print:

‘Tobacco and Epidemiology in Korea: old tricks, new answers?’ Broadbent A and Hwang Ss. Journal of Epidemiology and Community Health 2016;70:527-528. http://jech.bmj.com/content/70/6/527.full doi:10.1136/jech-2015-206567 [open access]

Paper: Causality and Causal Inference in Epidemiology: the Need for a Pluralistic Approach

Delighted to announce the online publication of this paper in International Journal of Epidemiology, with Jan Vandenbroucke and Neil Pearce: ‘Causality and Causal Inference in Epidemiology: the Need for a Pluralistic Approach

This paper has already generated some controversy and I’m really looking forward to talking about it with my co-authors at the London School of Hygiene and Tropical Medicine on 7 March. (I’ll also be giving some solo talks while in the UK, at Cambridge, UCL, and Oxford, as well as one in Bergen, Norway.)

The paper is on the same topic as a single-authored paper of mine published late 2015, ‘Causation and Prediction in Epidemiology: a Guide to the Methodological Revolution.‘ But it is much shorter, and nonetheless manages to add a lot that was not present in my sole-authored paper – notably a methodological dimension that, as a philosopher by training, I was ignorant. The co-authoring process was thus really rich and interesting for me.

It also makes me think that philosophy papers should be shorter… Do we really need the first 2500 words summarising the current debate etc? I wonder if a more compressed style might actually stimulate more thinking, even if the resulting papers are less argumentatively airtight. One might wonder how often the airtight ideal is achieved even with traditional length paper… Who was it who said that in philosophy, it’s all over by the end of the first page?

Paper – Tobacco in Korea

Alex Broadbent and Seung-sik Hwang, 2016. ‘Tobacco and epidemiology in Korea: old tricks, new answers?’ Journal of Epidemiology and Community Health doi:10.1136/jech-2015-206567.

Now available online first, open access.

http://jech.bmj.com/content/early/2016/01/14/jech-2015-206567.full

For those at the recent CauseHealth workshop N=1, this relates to the same key topic (viz. the application of population evidence to an individual), but in the legal rather than clinical context.

 

Book: B Smart, “Concepts and Causes in the Philosophy of Disease”

Recently published with Palgrave Macmillan: Concepts and Causes in the Philosophy of Disease, by Benjamin Smart. A very interesting short book that aims to summarise and progress some of the central recent work in the philosophy of medicine, concerning the nature of health and disease, causality in medicine, the classification of diseases and the relation between medicine and public health.

On Amazon: http://www.amazon.co.uk/gp/search?index=books&linkCode=qs&keywords=9781137552938

On the Palgrave site: http://www.palgrave.com/page/detail/?k=9781137552914