Western Cape COVID-19 levels higher than rest of SA. Is it because they defy lockdown there? Probably not, says phone data

https://www.ecologi.st/post/covid/ Evidence from phone data that W Cape adherence to lockdown has been quite strict thus lack of adherence is less likely to be the cause of the spike there. Thanks to Monomiat Ebrahim for the share.

Wondering if this means it is more likely to be:

1. A demographic feature such as age

2. A latitude feature – around the equator, COVID-19 has generally been less prevalent

3. A climate feature

4. High concentrations of “starters” leading to a critical mass for an epidemic

…add your pet hypothesis here!

Spectator podcast Women with Balls, with Oxford epidemiologist Sunetra Gupta


Katy Balls talks to Sunetra Gupta, Professor of Theoretical Epidemiology at the University of Oxford. An expert in the fight against infectious diseases, she is the lead scientist behind the Oxford study that disputed Imperial College’s dire coronavirus predictions. She is also a novelist and translator. On the podcast, she talks to Katy about her writing and how it was inspired by her intellectual father; her dispute with the mentor of Imperial College’s Neil Ferguson; and how she has found being in the public eye.

From Judea Pearl’s blog: report of a webinar: “Artificial Intelligence and COVID-19: A wake-up call” #epitwitter @TheBJPS

Check the entry on Pearl’s blog which includes a write-up provided by the organisers

Video of the event is available too

Ebola outbreak declared in Democratic Republic of Congo. – “This outbreak is a reminder that Covid-19 is not the only health threat people face,” said Tedros Adhanom Ghebreyesus, World Health Organization director-general. – https://www.ft.com/content/804de211-c28e-49aa-852e-bfeea3865c05?fbclid=IwAR1yE2AAaGz-QBuNN-oUuQ_DOYN61rQTIWFT3ZX1EhNA2-IJeXb4fz_7V-o @FT

Ebola outbreak declared in Democratic Republic of Congo

And check this 3 min video from the FT reporter Bernadeta Dadonaite – it’s very good:

The stats for this disease are insane. In the first oubreak in 1976, 88% of patients died. In the outbreak in the east of DRC last year 66% of patients died. And I’ve not heard anyone suggest it is ever asymptomatic. That’s a properly scary disease.

I can’t find the press briefing from which the story is drawn, so perhaps it wasn’t accompanied by a written statement.


IFK Panel 3 June @ 17.30 (SA), Inequality after Covid 19 – Letlhokwa Mpedi (UJ Dean of Law), Sridhar Venkatapuram (KCL Global Health Institute), Steven Friedman (UJ Professor, political scientist and public intellectual) – please register: https://universityofjohannesburg.us/4ir/covid-19/

Please join us for a panel discussion on Inequality after Covid, Wednesday 1 June @ 17.30 South Africa, W Europe |  16.30 UK | 11.30 US East Coast | 23.30 Beijing China | 01.30 [Thu] Sydney). Please “arrive” (log in) 15 minutes beforehand to ensure time for you to be admitted prior to the event as we admit participants individually for security reasons. We start sharp on the hour. To join you first need to register here: https://universityofjohannesburg.us/4ir/covid-19/


  • Professor Letlhokwa Mpedi is Executive Dean of Law at the University of Johannesburg and a specialist in labour law and social protection.
  • Dr Sridhar Venkatapuram is Senior Lecturer in Global Health and Philosophy at King’s College Global Health Institute.
  • Professor Steven Friedman is Professor at the University of Johannesburg. He is a political scientist, columnist, public intellectual, activist, former trade unionist and journalist.

Facilitated by Professor Alex Broadbent, Director of the Institute for the Future of Knowledge at the University of Johannesburg

You need to register to watch this live, and it will be posted as a recording afterwards. Register here:


This is the fourth in a series of webinars on Reimaging the World After COVID-19, organised by the Institute for the Future of Knowledge in collaboration with the UJ Library and Information Centre on the initiative of the Vice Chancellor’s Office at the University of Johannesburg.

Inequality After COVID

The COVID-19 pandemic has magnified inequalities between and across different groups and countries across the world. Effective social protection has been critical to the reduction of vulnerability. However, as many countries struggle to provide universal healthcare, the outbreak of COVID-19 has put pressure on healthcare systems globally. This has seen governments redirecting fiscus towards curtailing the effects of the pandemic, including in countries where healthcare systems are under-resourced and poorly staffed.

So far as we know, COVID-19 is markedly more dangerous for older people. Higher proportions of serious, critical and fatal COVID-19 are also observed among those suffering from certain other diseases such as diabetes, hypertension, and pre-existing heart disease. On the other hand, certain population groups are disproportionately impacted by economic and social disruption caused both by the disease itself and measures that are taken in an effort to curtail its spread. These include groups already marginalised by pre-existing structural inequalities among others: women and children, the elderly; racial, ethnic and religious minorities; People Living with HIV/AIDS (PLWHA); Persons with Disabilities (PWD) (physical and/or mental); and migrants, refugees and asylum-seekers. Not all of these people are not at high risk from COVID-19 itself, while many people who are at risk from COVID-19 are not in this group. In particular, the very strong age-related gradient in risk of serious, critical and fatal COVID-19 means that the wealthier populations, which tend to be older, are over-represented among the groups at highest direct risk from COVID-19. Conversely, the poorer and thus younger a population is, the less at risk it tends to be from COVID-19, but the more at risk from disruption to economies, societies and health services created by the disease and associated response measures.

The world is more unequal than any single country. According to an Oxfam’s 2020 report titled, Time to Care: Unpaid and Underpaid Care Work and the Global Inequality Crisis, the world’s 2,153 billionaires have more wealth than 60% of the global population; and the 22 richest men in the world have more wealth than all the women in Africa. With closure of schools, many girls and children from low-income households have been affected, and some may not be able to go back to schools. Lockdown regulations restricting mobility have affected activities of younger workers as well as those in precarious types of employment. As rates of relative deprivation increase, states have introduced cash-based assistance and other forms of social support. Migrants have been responded to negatively across the world – Chinese descendants have reported xenophobia, with their businesses attacked; and African migrants in China have also have also suffered the same fate. COVID-19 has been seen the rise of right-wing nationalist-populist governments. On the other hand, the pandemic has also underscored the way that individual fates are intertwined in public health, and the necessity of strong public healthcare provision for responding to collective threats. It is fair to surmise that universal healthcare may in future be elevated in a number of countries’ policy priorities.

This webinar will explore the various issues concerning inequality that COVID-19 has highlighted as well as those created by the response to the disease. How should nation-states strengthen public health systems for future threats of this kind? Will conditions for precarious workers change post-pandemic? Governments will, for the short term at least, want to find alternative ways in which to support livelihoods, on pain of widespread malnutrition or even famine. How they are going to respond to increased deprivation? Will governments be able to fund these interventions? Will loans from international lenders come with conditions that may impact such schemes? How will COVID-19 influence migration regulation and border management, and ultimately, how are governments going to achieve a more inclusive society in which the respect for human rights for all will be achieved? Fundamentally, are there choices we can make now, as nations and a world, that will reduce the inequality and the hardship that falls on those at the bottom of the global pile?

Register here: https://universityofjohannesburg.us/4ir/covid-19/



I’ve got an opinion out in the Sunday Independent 31 May: ‘We were set up to lock down’ People who say “It was right to lock down as a precaution but things have changed and now we should unlock” are wrong and should admit it or we won’t do better next time #epitwitter

This was published in 31 May in the Sunday Independent (South Africa) but for some reason they have not made this available online. So:

  1. Here is an image of what was published (presumably fine to share because it was in print only) We were set up to lock down (The Sunday Independent)
  2. Below is the text I submitted. They did not run the final text past me and there are some irritating editorial bungles that make the published text less readable (and sometimes ungrammatical). So, the one below is probably a better read.

We were set up to lock down

There’s a standard line. South Africa’s decision to lockdown when we did was sensible. Little was known about COVID-19 and its potential impact here. Since then, the situation has changed. We know more about how the pandemic is likely to unfold and who the disease affects, and we have made preparations to deal with the likely impact. The economy continues to deteriorate each day we stay locked down, and with it, people’s livelihoods. It is now time to unlock; in fact, unlocking is overdue. Decisive steps should now be taken to restore the economy, education, health services, and other pillars of the nation to their “new normal” function.

This familiar story is wrong. The evidence available at the time we locked down supported doing something more moderate. Lockdown was not the right response for South Africa to the threat COVID-19 posed in South Africa. Its potential benefits for a population the majority of whom is under 27, and can expect to be dead by their mid-sixties, did not outweigh the certain costs to the one in four living in poverty, and the many more who would join them on losing their livelihoods. Besides, it was obvious that, for most of the population, lockdown was impossible, due to overcrowding, shared sanitation, and the necessity of travel to receive social grants.

Contrary to what’s said, the evidence hasn’t changed. The relevant characteristics of COVID-19 were apparent by the end of March, when the decision to lock down was taken. Much of it is cited in an opinion piece published on the same day lockdown was announced, 23 March, a piece arguing that a one-size-fits-all approach could not be applied to achieving social distancing. The piece was written by a colleague and myself, unaware that that same day the country would move in exactly the opposite direction to the one we advised. We wrote several further pieces, and by 8 April I was sure that lockdown was wrong for Africa, including but not limited to South Africa, and published an opinion to that effect. The next day lockdown, was extended.

What has changed? Is it the evidence, or is it intellectual fashion?

It’s possible that those of us making anti-lockdown arguments two months ago are like stopped clocks that inevitably tell the right time when it comes. But the salient evidence was there all along. The dominance of age as a predictive (who knows whether causal, or how) risk factor for serious, critical and fatal COVID-19. One credible infection fatality estimate published in March based on data from China was 0.66%, with a marked age gradient. A credible systematic review concluding that school closures were not supported by evidence was published in early April. Perhaps the major uncertainty concerned HIV as a potential vulnerability of the South African population. But it was known early that treated HIV status was not correlated with COVID-19 risk, and in early April early results emerged that this might be true even for untreated HIV. Those same results are being relied on in current opinions, in some cases by people who dismissed them at the time.

If that’s correct, and many will deny it, then how could so many academics, politicians, analysts and commentators have got it wrong? And what stops them seeing it now?

Obviously there are social costs to admitting error, and perhaps psychological ones too. Certainly we’re better at spotting each other’s mistakes than our own. But I think there was something else in play, which continues to confuse us. We felt we were presented with two options, and chose one of them as a precaution. This was not the reality, but a product of the modelling approaches that informed policy and perception alike at the time, and that still play worryingly prominent roles in the policy approach.

These models had and have three misleading features.

First, they did not and do not estimate the health burden of COVID-19. This is because they model the effects of reduction in social contact without properly modelling the effects of the actual measures taken to achieve that reduction. A free decision to stay home is represented in the same way as being chained to the bed, or indeed being shot dead on the spot. These have different consequences for mortality, none of which show up in the models. Perhaps this doesn’t matter in the developed world, where economic downturn means poverty but not starvation. But it’s crucial in the developing world, where recession often means death.

Second, and relatedly, contextual differences were obliterated by the use of using a simple percentage scale to measure the reduction in social distancing. This meant that, for instance, a 60% reduction in social distancing was represented as the same thing in Geneva and Johannesburg. Whereas, of course, that is an outcome one takes by implementing policy decisions, which would usually be informed by the local context.

Third, the different scenarios modelled were then given different names, re-introducing a qualitative difference between them that was simply absent in the input. Qualitative differences were thus obliterated in the inputs – perfectly reasonably, from a modelling perspective – then introduced in the output. Where before we had (say) a 40% reduction in distancing, we have “mitigation”. And instead of (say) a 60% reduction, we have “suppression”. These began life as arbitrary points on a continuous scale, as the modellers would have been the first to admit. But with different names, they became treated as qualitatively different strategies. Moreover, the leading models at the time predicted hugely greater benefits from suppression compared to mitigation.

Thus, almost magically, the huge range of possible measures, varying between context depending on context and policy priorities, became transformed into a choice between lockdown and no-lockdown. Lockdown was exemplified already in China and Europe as a set of specific restrictions, and not as an abstract percentage reduction in social contact.

All context, all nuance, all qualitative factors were lost, washed out in a modelling exercise that was insensitive to contextual differences when formulating its inputs, and unwise in giving qualitatively different labels to its outputs.

Against this background, precautionary thinking naturally overtakes cost-benefit thinking. Proportionality gave way to precaution. The anti-COVID measure has a clear form: restricting on economic activities and confining people to their homes. It is so much more effective than any other measure that it presents us with a binary choice; other measures are pathetically ineffective by comparison, because in the process of de-quantifying the effectiveness of suppression over mitigation, regional differences have been lost. The choice is between action and inaction, and the cost of doing nothing appears huge: just look at the footage from Italy. Yes, it will be painful, but it’s better than the alternative.

But the precautionary approach was never necessary. There was always a range of possible actions, the costs of lockdown were always obvious, and the most significant determinants of the risk profile of the South African population were known.

Now, European countries have passed their peak, and we are again ignoring our own context. Our curve remains exactly the same as it was the day we went into lockdown (a straight line on a logarithmic scale, which is the relevant scale here – for both cases and deaths). Lockdown made no difference, if those graphs are to be believed; and it’s hard to know what other data to look at. The decision to unlock is, as Glenda Gray pointed out, not backed by any scientific case. Yet it’s the right one, not because the evidence changed, but because it was right all along. Lockdown was always wrong for Africa, including South Africa.

Benjamin Smart in the Independent: ‘Parents shouldn’t fear COVID-19’ https://www.iol.co.za/sundayindependent/dispatch/parents-shouldnt-fear-covid-19-48455400 @bthsmart


This is from last week but I don’t recall sharing it. A concise account of why people should not worry about school reopening. It is written for SA but applies also to the U.K. where timing is similar, as are the fears, including among people who consider themselves educated.